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Mouse BIRN Atlasing Toolkit

Mouse BIRN Atlasing Toolkit

The Mouse Biomedical Informatics Research Network (MBIRN) Atlasing Toolkit (MBAT) is a collaborative effort by groups in the Mouse BIRN to create an interoperable toolkit that offers an intuitive way to access the functionality offered at the various institutions within the MBIRN Network.  More 

MBAT Features

Search Data
View Atlases
Explore Data
Navigate the Brain

Data Queries

One of the main goals of the Mouse BIRN collaboration is to make querying and accessing multiple data types and sources within the context of a digital atlas easy and intuitive. To achieve these goals, there are two new query options available.  More 

Atlases

MBAT is distributed with a full atlas version that is packaged with an MR data file, a delineation (MDA2006), 3D surfaces, and a structural hierarchy. More 

Data Volumes

MBAT provides the user with the option of downloading several different data volumes for visualization purposes. More

BrainGraph

The BrainGraph editor has been integrated into the MBAT application.  BrainGraph adds colored label nodes that correspond to the label volume and label index.  This makes it easier for the user to identify and navigate the brain structures. More